SequenceDigester
Will translate a FASTA file into a text file of peptides.
Features:
- Use the whole genome or just the ORFs (Open Reading Frames)
- Specify how many missed cleavages you want
- Simulates Trypsin digestion
- Set peptide mass criteria
- Can use protein or DNA files
Removes duplicate peptides: peptides which have the same locus and same amino acid sequence except one terminates with a stop.