Notes on hanging bug

by Brian | 3rd November 2009

Lately GFS has been hanging during long tasks. It is a hang where processing drops to nothing (vs. high processing with zero progress). When running with two threads it hangs after about 35 minutes (counting 5 minutes of digestion) in single thread mode it goes for 55 minutes. When paused at the hang point and [...] Read More

Redundant mass list loading?

by Brian | 27th August 2009

It looks like finding mass list files goes on in runListsWithParams in ClientManager loadTandemData in FHMSMSCategory. tandemFilesContainedInDirectory in ClientManager At first glance it looks like the code in runListsWithParams in ClientManager is useless… this is also where a bug is popping up. Read More

Memory leak

by Brian | 29th June 2009

Last night it seemed like the code I was working on had developed a memory leak…. checking onto that. Read More

free error

by Brian | 23rd June 2009

am getting runtime errors… am probably using free() where I should not be so am commenting the free(acidSequence) that I find. Bug: GFS(1946,0xb0196000) malloc: *** error for object 0xb01959da: Non-aligned pointer being freed *** set a breakpoint in malloc_error_break to debug Read More