Amino Acid Similarity

by Brian | 24th June 2009

If we *had* to order the amino acids by similarity along one dimension, how would we do it? I’ve come up with a starting point that looks… at least like a good starting point. Using the RNA codon table I used the second nucleotide as most significant, the first nucleotide after that and the least significant being the third. Serine was a bit of a wild card, but this is the order I derived:

  1. G
  2. R
  3. W
  4. C
  5. E
  6. D
  7. K
  8. N
  9. Q
  10. H
  11. Y
  12. A
  13. T
  14. P
  15. S
  16. V
  17. M
  18. I
  19. L
  20. F

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